Publications

Project publications

2019

  • [DOI] C. Papalitsas, T. Andronikos, K. Giannakis, G. Theocharopoulou, and S. Fanarioti, “A QUBO model for the traveling salesman problem with time windows,” Algorithms, vol. 12, iss. 11, 2019.
    [Bibtex]
    @Article{a12110224,
    AUTHOR = {Papalitsas, Christos and Andronikos, Theodore and Giannakis, Konstantinos and Theocharopoulou, Georgia and Fanarioti, Sofia},
    TITLE = {A {QUBO} Model for the Traveling Salesman Problem with Time Windows},
    JOURNAL = {Algorithms},
    VOLUME = {12},
    YEAR = {2019},
    NUMBER = {11},
    ARTICLE-NUMBER = {224},
    URL = {https://www.mdpi.com/1999-4893/12/11/224},
    ISSN = {1999-4893},
    DOI = {10.3390/a12110224}
    }
  • [DOI] K. Giannakis, G. Theocharopoulou, C. Papalitsas, S. Fanarioti, and T. Andronikos, “Quantum conditional strategies and automata for prisoners’ dilemmata under the EWL scheme,” Applied Sciences, vol. 9, iss. 13, 2019.
    [Bibtex]
    @article{app9132635,
    AUTHOR = {Giannakis, Konstantinos and Theocharopoulou, Georgia and Papalitsas, Christos and Fanarioti, Sofia and Andronikos, Theodore},
    TITLE = {Quantum Conditional Strategies and Automata for Prisoners' Dilemmata under the {EWL} Scheme},
    JOURNAL = {Applied {S}ciences},
    VOLUME = {9},
    YEAR = {2019},
    NUMBER = {13},
    ARTICLE-NUMBER = {2635},
    URL = {https://www.mdpi.com/2076-3417/9/13/2635},
    ISSN = {2076-3417},
    DOI = {10.3390/app9132635}
    }
  • G. Theocharopoulou, K. Giannakis, C. Papalitsas, S. Fanarioti, and T. Andronikos, “Elements of game theory in a bio-inspired model of computation,” in Information, Intelligence, Systems and Applications (IISA), 2019 10th International Conference on, 2019, p. 1–4.
    [Bibtex]
    @inproceedings{giannakis2019game,
    title={Elements of game theory in a bio-inspired model of computation},
    author={Theocharopoulou, Georgia and Giannakis, Konstantinos
    and Papalitsas, Christos
    and Fanarioti, Sofia
    and Andronikos, Theodore},
    booktitle={Information, {I}ntelligence, {S}ystems and {A}pplications ({IISA}), 2019 10th {I}nternational {C}onference on},
    pages={1--4},
    year={2019},
    organization={IEEE}
    }
  • K. Giannakis, C. Papalitsas, G. Theocharopoulou, S. Fanarioti, and T. Andronikos, “A quantum-inspired optimization heuristic for the multiple sequence alignment problem in bio-computing,” in Information, Intelligence, Systems and Applications (IISA), 2019 10th International Conference on, 2019, p. 1–8.
    [Bibtex]
    @inproceedings{giannakis2019quantum,
    title={A quantum-inspired optimization heuristic for the multiple sequence alignment problem in bio-computing},
    author={Giannakis, Konstantinos
    and Papalitsas, Christos and Theocharopoulou, Georgia
    and Fanarioti, Sofia
    and Andronikos, Theodore},
    booktitle={Information, {I}ntelligence, {S}ystems and {A}pplications ({IISA}), 2019 10th {I}nternational {C}onference on},
    pages={1--8},
    year={2019},
    organization={IEEE}
    }

2018

  • K. Giannakis, G. Theocharopoulou, C. Papalitsas, S. Fanarioti, and T. Andronikos, “Particular biomolecular processes as computing paradigms,” in Genedis 2018, P. Vlamos, Ed., Cham: Springer International Publishing, 2018, p. 1–16.
    [Bibtex]
    @incollection{Giannakis2018A,
    author="Giannakis, Konstantinos
    and Theocharopoulou, Georgia
    and Papalitsas, Christos
    and Fanarioti, Sofia
    and Andronikos, Theodore",
    editor="Vlamos, Panayiotis",
    title="Particular biomolecular processes as computing paradigms",
    bookTitle="GeNeDis 2018",
    year="2018",
    publisher="Springer International Publishing",
    address="Cham",
    pages="1--16"
    }

 

Past years publication

2018

  • [DOI] T. Andronikos, A. Sirokofskich, K. Kastampolidou, M. Varvouzou, K. Giannakis, and A. Singh, “Finite automata capturing winning sequences for all possible variants of the PQ penny flip game,” Mathematics, vol. 6, iss. 2, 2018.
    [Bibtex]
    @article{math6020020,
    author = {Andronikos, Theodore and Sirokofskich, Alla and Kastampolidou, Kalliopi and Varvouzou, Magdalini and Giannakis, Konstantinos and Singh, Alexander},
    title = {Finite Automata Capturing Winning Sequences for All Possible Variants of the {PQ} Penny Flip Game},
    journal = {Mathematics},
    volume = {6},
    year = {2018},
    number = {2},
    issn = {2227-7390},
    doi = {10.3390/math6020020}
    }
  • C. Papalitsas, P. Karakostas, T. Andronikos, S. Sioutas, and K. Giannakis, “Combinatorial GVNS (General Variable Neighborhood Search) optimization for dynamic garbage collection,” Algorithms, vol. 11, iss. 4, p. 38, 2018.
    [Bibtex]
    @article{papalitsas2018combinatorial,
    title={Combinatorial {GVNS} ({G}eneral {V}ariable {N}eighborhood {S}earch) Optimization for Dynamic Garbage Collection},
    author={Papalitsas, Christos and Karakostas, Panayiotis and Andronikos, Theodore and Sioutas, Spyros and Giannakis, Konstantinos},
    journal={Algorithms},
    volume={11},
    number={4},
    pages={38},
    year={2018},
    publisher={Multidisciplinary Digital Publishing Institute}
    }

2017

  • C. Papalitsas, P. Karakostas, K. Giannakis, and T. Andronikos, “Initialization methods for the TSP with Time Windows using qGVNS,” in 6th international symposium on operational research,or in the digital era – ict challenges, 2017.
    [Bibtex]
    @inproceedings{papal17conf,
    title={Initialization methods for the {TSP} with {T}ime {W}indows using q{GVNS}},
    author={Papalitsas, Christos and Karakostas, Panayiotis and Giannakis, Konstantinos and Andronikos, Theodore},
    booktitle={6th International Symposium on Operational Research,OR in the digital era - ICT challenges},
    location = {Thessaloniki, Greece},
    year={2017},
    organization={Hellenic Operational Research Society (HELORS)}
    }
  • A. Singh, K. Giannakis, and T. Andronikos, “Qumin, a minimalist quantum programming language,” Arxiv preprint arxiv:1704.04460, 2017.
    [Bibtex]
    @article{singh2017qumin,
    title={Qumin, a minimalist quantum programming language},
    author={Singh, Alexander and Giannakis, Konstantinos and Andronikos, Theodore},
    journal={arXiv preprint arXiv:1704.04460},
    year={2017}
    }
  • [DOI] K. Giannakis, A. Singh, K. Kastampolidou, C. Papalitsas, and T. Andronikos, “QM automata: a new class of restricted quantum membrane automata,” in Genedis 2016: computational biology and bioinformatics, P. Vlamos, Ed., Cham: Springer International Publishing, 2017, p. 193–204.
    [Bibtex]
    @incollection{Giannakis2017,
    author="Giannakis, Konstantinos
    and Singh, Alexandros
    and Kastampolidou, Kalliopi
    and Papalitsas, Christos
    and Andronikos, Theodore",
    editor="Vlamos, Panayiotis",
    title="{QM} Automata: A New Class of Restricted Quantum Membrane Automata",
    bookTitle="GeNeDis 2016: Computational Biology and Bioinformatics",
    year="2017",
    publisher="Springer International Publishing",
    address="Cham",
    pages="193--204",
    isbn="978-3-319-56246-9",
    doi="10.1007/978-3-319-56246-9_15",
    url="https://doi.org/10.1007/978-3-319-56246-9_15"
    }
  • [DOI] G. Theocharopoulou, C. Bobori, and P. Vlamos, “Formal models of biological systems,” in Genedis 2016, Cham, 2017, p. 325–338.
    [Bibtex]
    @InProceedings{10.1007/978-3-319-56246-9_27,
    author="Theocharopoulou, Georgia
    and Bobori, Catherine
    and Vlamos, Panayiotis",
    editor="Vlamos, Panayiotis",
    title="Formal Models of Biological Systems",
    booktitle="GeNeDis 2016",
    year="2017",
    publisher="Springer International Publishing",
    address="Cham",
    pages="325--338",
    doi="10.1007/978-3-319-56246-9_27",
    url="https://doi.org/10.1007/978-3-319-56246-9_27",
    isbn="978-3-319-56246-9"
    }
  • [DOI] A. Singh, K. Giannakis, K. Kastampolidou, and C. Papalitsas, “Methods and patterns for user-friendly quantum programming,” in Genedis 2016 : geriatrics, P. Vlamos, Ed., Cham: Springer International Publishing, 2017, p. 201–210.
    [Bibtex]
    @incollection{Singh2017,
    author="Singh, Alexandros
    and Giannakis, Konstantinos
    and Kastampolidou, Kalliopi
    and Papalitsas, Christos",
    editor="Vlamos, Panayiotis",
    title="Methods and Patterns for User-Friendly Quantum Programming",
    bookTitle="GeNeDis 2016 : Geriatrics",
    year="2017",
    publisher="Springer International Publishing",
    address="Cham",
    pages="201--210",
    doi="10.1007/978-3-319-57348-9_17",
    url="https://doi.org/10.1007/978-3-319-57348-9_17"
    }
  • [DOI] K. Giannakis and T. Andronikos, “Membrane automata for modeling biomolecular processes,” Natural computing, vol. 16, iss. 1, p. 151–163, 2017.
    [Bibtex]
    @Article{Giannakis2017,
    author="Giannakis, Konstantinos
    and Andronikos, Theodore",
    title="Membrane automata for modeling biomolecular processes",
    journal="Natural Computing",
    year="2017",
    volume="16",
    number="1",
    pages="151--163",
    doi="10.1007/s11047-015-9518-1",
    url="http://dx.doi.org/10.1007/s11047-015-9518-1"
    }

2016

  • C. Papalitsas, P. Karakostas, and K. Kastampolidou, “A quantum inspired GVNS: some preliminary results,” in Genedis 2016, P. Vlamos, Ed., Springer International Publishing, 2016, p. (to appear).
    [Bibtex]
    @incollection{papalitsas2016genedis,
    year={2016},
    booktitle={GeNeDis 2016},
    editor={Vlamos, Panayiotis},
    series={Advances in Experimental Medicine and Biology},
    title={A Quantum Inspired {GVNS}: Some preliminary results},
    publisher={Springer International Publishing},
    author={Papalitsas, Christos and Karakostas, Panayiotis and Kastampolidou, Kalliopi},
    pages={(to appear)}
    }

2015

  • G. Theocharopoulou, K. Giannakis, and T. Andronikos, “The mechanism of splitting mitochondria in terms of membrane automata,” in 2015 ieee international symposium on signal processing and information technology (isspit), 2015, p. 397–402.
    [Bibtex]
    @inproceedings{theocharopoulou2015mechanism,
    title={The mechanism of splitting mitochondria in terms of membrane automata},
    author={Theocharopoulou, Georgia and Giannakis, Konstantinos and Andronikos, Theodore},
    booktitle={2015 IEEE International Symposium on Signal Processing and Information Technology (ISSPIT)},
    pages={397--402},
    year={2015},
    organization={IEEE}
    }
  • K. Giannakis, C. Papalitsas, K. Kastampolidou, A. Singh, and T. Andronikos, “Dominant strategies of quantum games on quantum periodic automata,” Computation, vol. 3, iss. 4, p. 586–599, 2015.
    [Bibtex]
    @article{giannakis2015dominant,
    title={Dominant Strategies of Quantum Games on Quantum Periodic Automata},
    author={Giannakis, Konstantinos and Papalitsas, Christos and Kastampolidou, Kalliopi and Singh, Alexandros and Andronikos, Theodore},
    journal={Computation},
    volume={3},
    number={4},
    pages={586--599},
    year={2015},
    publisher={Multidisciplinary Digital Publishing Institute}
    }
  • K. Giannakis and T. Andronikos, “Mitochondrial fusion through membrane automata,” in Genedis 2014, P. Vlamos and A. Alexiou, Eds., Springer International Publishing, 2015, vol. 820, pp. 163-172.
    [Bibtex]
    @incollection{giannakis2015mitochondrial,
    year={2015},
    isbn={978-3-319-09011-5},
    booktitle={GeNeDis 2014},
    volume={820},
    series={Advances in Experimental Medicine and Biology},
    editor={Vlamos, Panayiotis and Alexiou, Athanasios},
    title={Mitochondrial Fusion Through Membrane Automata},
    publisher={Springer International Publishing},
    author={Giannakis, Konstantinos and Andronikos, Theodore},
    pages={163-172}
    }
  • K. Giannakis, C. Papalitsas, and T. Andronikos, “Quantum automata for infinite periodic words,” in Information, intelligence, systems and applications (iisa), 2015 6th international conference on, 2015, p. 1–6.
    [Bibtex]
    @inproceedings{giannakis2015quantum,
    title={Quantum automata for infinite periodic words},
    author={Giannakis, Konstantinos and Papalitsas, Christos and Andronikos, Theodore},
    booktitle={Information, Intelligence, Systems and Applications (IISA), 2015 6th International Conference on},
    pages={1--6},
    year={2015},
    organization={IEEE}
    }
  • C. Papalitsas, K. Giannakis, T. Andronikos, D. Theotokis, and A. Sifaleras, “Initialization methods for the TSP with Time Windows using variable neighborhood search,” in Information, intelligence, systems and applications, iisa 2015, the 6th international conference on, 2015.
    [Bibtex]
    @inproceedings{giannakisIISA2,
    title={Initialization methods for the {TSP} with {T}ime {W}indows using variable neighborhood search},
    author={Papalitsas, Christos and Giannakis, Konstantinos and Andronikos, Theodore and Theotokis, Dimitrios and Sifaleras, Angelo},
    booktitle={Information, Intelligence, Systems and Applications, IISA 2015, The 6th International Conference on},
    year={2015},
    organization={IEEE}
    }
  • K. Giannakis and T. Andronikos, “Use of Büchi automata and randomness for the description of biological processes,” International journal of scientific world, vol. 3, iss. 1, p. 113–123, 2015.
    [Bibtex]
    @article{IJSW4356,
    author = {Konstantinos Giannakis and Theodore Andronikos},
    title = {Use of {B}üchi automata and randomness for the description of biological processes},
    journal = {International Journal of Scientific World},
    volume = {3},
    number = {1},
    year = {2015},
    issn = {2307-9037},
    url = {http://www.sciencepubco.com/ojs245/index.php/IJSW/article/view/4356},
    pages = {113--123}
    }

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